The (Mc)R Language: The R Project for Statistical Computing
- labdsv: Ordination and Multivariate Analysis for Ecology
- ade4: Analysis of Ecological Data
- ape: Analyses of Phylogenetics and Evolution
- betapart: Partitioning beta diversity into turnover and nestedness components
- ecodist: Dissimilarity-based functions for ecological analysis
- ggplot2: An implementation of the Grammar of Graphics
- knitr: dynamic report generation
- nlme: Linear and Nonlinear Mixed Effects Models
- Pierre Legendre’s lab: R packages for ecological analysis
- ANOVA, permutation test, beta diversity, CCA, RDA, lmodel2, PCNM, and varpart etc.
- PhD: Phylogenetic Diversity
- Phylotools: Phylogenetic tools for ecologists
- spatstat: Spatial Point Pattern analysis, model-fitting, simulation, tests
- vegan: Community ecology packages