Ecological Researches
- ADE-4: a multivariate analysis and graphical display software
- BINMATNEST: nestedness analysis
- Cactus: a program for Comparative analysis of continuous traits using statistics
- CAFCA: group compatibility and component compatibility
- Caic: Computing phylogenetic constraints
- Canoco: Multivariate statistics. Particularly useful for Ordnination analyses
- Compare: Simle program for computing phylogenetic constraints
- Component: a tool for comparing trees)
- Distance: design and analysis of distance sampling surveys of wildlife populations
- EasyReg: Regression and kernel density analysis
- EcoSimR: Null models for Ecology
- EstimateS: Estimating species richness with non parametric estimators
- Mark: Estimations based on marked individuals
- PCORD: Multivariate Analysis of Ecological Data
- PCCA: phylogenetic canonical correlation analysis
- Phylip: Inferring phylogenies
- Past: multivariate analyses in community ecology
- Rangemodel: Geometric constraints analysis
- Resampling: Bootstrapping and jackknifing
- SAM: Spatial Analysis in Macroecology
- SDR-IV Species Diversity and Richness 4: diversity indices and species abundance distribution
- Spade: Estimating species richness
- SPOMSIM: Metapopulation simulation
- Temperature calculator: Classic Nestedness temperature calculator
- TreeView: a program for manipulating phylogenetic trees
- Werner Ulrich’s lab: Ecology and Biogeography
- Nestedness: measuring order and disorder in ecological communities
- Niche: metacommunity analysis
- NODF: nestedness analysis
- Paris: pairwise species associations in ecological matrices
- PatchOccupancy: species spatial distributions
- RAD: rank abundance distribution
- Impact: Species response to environmental gradient
- Turnover: null models
- Transitivity: multivariate competitive interactions
- Ws2m: Estimating species richness
- zt: Mantel and Partial Mantel test
Biogeographical Analyses:
- Biomapper: a kit og GIS- and statistical tools designed to build habitat suitability (HS) models
- DesktopGarp: to predict and analyze wild species distributions
- DIVA GIS: for mapping and analyzing biodiversity data
Community and Population Ecology
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INHS: including software for population density and abundance, survival rates for capture-recapture of marked populations, bioacustics, home range, banding data analysis, rarefaction, geometric series, log series, truncated log normal, broken stick, Q statistic, Shannon diversity index, Brillouin index, Simpson’s index, McIntosh’s index, Berger-Parker index, jack-knifing, Pielou’s pooled quadrat, beta diversity, similarity measures, radio telemetry, landscape structure analysis, LOcally Weighted regrESSion, multivariate statistics
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Pisces Staff: including packages for: NMDS, DECORANA, TWINSPAN, Reciprocal Averaging, PCA, ANOSIM, SIMPER, Cluster analysis, Similarity and distance measures; Canonical Correspondence Analysis (CCA), Redundancy Analysis (RDA) and Multiple Regression (MR); diversity and distance measures from genetic sequences; statistical analysis of circular data; Fuzzy clustering methods; animal and plant density from measurements of the distance between objects; population statistics from removal trapping data; fits and plots von Bertalanffy, Seasonally-adjusted von Bertalanffy, Gompertz, Logistic and many other growth curves to length and/or weight at age data; population size of both closed and open populations with mark-recapture methods
Phylogeny Programs
Evolutionary Programs
Sources from Simone Fattorini, and the Internet. Compiled by Xingfeng Si.